MED263: Bioinformatics Applications to Human Disease

Directors: Lucila Ohno-Machado and Jihoon Kim
TAs: "Henry" Yingxiang Huang
Time: 2-4pm, Tuesdays and Thursdays (Jan 5 - Mar 16, 2017)
Place: Medical Education Telemedicine (MET) building room 204
Units: 4

Course Schedule


Week
​Class Date
​Topic
​Instructor
1
Thursday 1/5
Overview
Lucila Ohno- Machado

2
Tuesday 1/10
Software tools for bioinformatics
Jihoon Kim
Thursday 1/12Ethics, Privacy and Security
Xiaoqian Jiang ​

3
Tuesday 1/17
Galaxy
Olivier Harismendy
Thursday 1/19Hands-on data analysis
Olivier Harismendy

4
Tuesday 1/24
Genome Interpretation
Ali Torkamani
​Thursday 1/27
Hands- on data analysis  Ali Torkamani

5
Tuesday 1/31
Proteomics
Nuno Bandeira
​Thursday 2/2
​Hands- on data analysis
Nuno Bandeira


6
Tuesday 2/7
ChiP- Seq
Sven Heinz
​Thursday 2/9
Hands- on data analysis
Sven Heinz

7
Tuesday 2/14
GRO- Seq
Chris Benner
​Thursday 2/16
Hands- on data analysisChris Benner

8
​Tuesday 2/21
​RNA- Seq
​Kathleen Fisch
​Thursday 2/23
Hands- on data analysis
Kathleen Fisch

9
Tuesday 2/28
​Network Analysis
​ Hannah Carter
​Thursday 3/2
Hands- on data analysis
​Hannah Carter
10
​Tuesday 3/7
​Microbiome
​Rob Knight
​Thursday 3/9
Hands- on data analysis
​Rob Knight


11

​Tuesday 3/14
Disease causing mutation
Vikas Bansal
​Thursday 3/16
​Hands-on session
Vikas Bansal

 

Grading


​Attendance​10%
​Homework/Practicals​50%
​Final
​40%