MED263: Bioinformatics Applications to Human Disease

Directors: Lucila Ohno-Machado and Jihoon Kim
TAs: TBD
Time: 2-4pm, Tuesdays and Thursdays (Jan 9 - Mar 8, 2018)
Place: Medical Education Telemedicine (MET) building room 304 with room changes on the following 3 class days: Room 204 on Thursday 1/11/18, Room 215 on Tuesday, 2/20/18, and Room 204 on Thursday, 2/22/18.
Units: 4

Course Schedule 

To be updated soon for 2018 Winter Quarter.  The 2017 course schedule is shown below for reference.

 

Week Class Date Topic Instructor
1Thursday 1/5OverviewLucila Ohno- Machado

2
Tuesday 1/10Software tools for bioinformaticsJihoon Kim
Thursday 1/12Ethics, Privacy and SecurityXiaoqian Jiang

3
Tuesday 1/17Galaxy Olivier Harismendy 
Thursday 1/19Hands-on data analysis Olivier Harismendy

4
Tuesday 1/24 Genome InterpretationAli Torkamani 
Thursday 1/27Hands- on data analysis Ali Torkamani

5
Tuesday 1/31ProteomicsNuno Bandeira 
Thursday 2/2Hands- on data analysis Nuno Bandeira 


6
Tuesday 2/7ChiP- SeqSven Heinz 
Thursday 2/9Hands- on data analysis Sven Heinz

7
Tuesday 2/14 GRO- SeqChris Benner
Thursday 2/16Hands- on data analysisChris Benner

8
Tuesday 2/21RNA- SeqKathleen Fisch 
Thursday 2/23Hands- on data analysisKathleen Fisch

9
Tuesday 2/28Network AnalysisHannah Carter
Thursday 3/2Hands- on data analysis Hannah Carter 
10Tuesday 3/7Microbiome Rob Knight 
Thursday 3/9Hands- on data analysis Rob Knight 


11
Tuesday 3/14Disease causing mutationVikas Bansal 
Thursday 3/16Hands-on sessionVikas Bansal


 

Grading


​Attendance​10%
​Homework/Practicals​50%
​Final
​40%